Connecting Infrastructure, Connecting Research

Sequence databases in mpiBLAST format

These files can be found in ${DB}/EBI_NUCLEOTIDE_DB/mpi-blast_DB on NGS site offereing mpiBLAST. The suffix "upd" refers to the updates of the corresponding dataclass file since the latest quarterly release.

Breakdown by Dataclass.

 
File Description
est est_upd Expressed Sequence Tag
gss gss_upd Genome Sequence Scan
htc htc_upd High Throughput cDNA sequencing
htg htg_upd High Throughput Genome sequencing
pat pat_upd Patents
std std_up Standard
sts sts_upd Sequence Tagged Site
tpa tpa_upd Third Party Annotation
wgs wgs_upd Whole Genome Shotgun
con_upd  
ann_upd  
 

 

Applications Support

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Acknowledgements

Please note: When publishing work based on use of the NGS, users should acknowledge both the authors of any programs used (see the individual program web sites, or contact the authors directly) and the NGS directly using the following line:
"The authors would like to acknowledge the use of the UK National Grid Service in carrying out this work"
This line must also accompany any use of the NGS logos.